XWINNMR AU Reference Manual
Chapter 10. List of Bruker AU programs 

10.1 Short description of all Bruker AU programs

This chapter contains a list with the names and short-descriptions of all Bruker library AU programs. This list was made for XWIN-NMR 2.5. Some AU programs are not available for older versions of XWIN-NMR.
 

Z-spoil Set a Z-spoil value within the SCM.
abs2.water Performs an F2 baseline correction on a 2D dataset left and right of the water.
abs2D Performs a baseline correction on a 2D dataset in both dimensions.
acqu_fid_ser Acquires a single FID of the current 2D experiment and replaces the old fid in the ser file.
acqulist Set up and start acquisitions using f1, f2, f3, vt, vc, vd, vp lists.
amplstab Calculates the amplitude stability based on a peaklist file.
angle Perform multiple acquisitions and ft?s. This program is particularly interesting when you want to adjust the magic angle for MAS type experiments.
asclev Converts the level file in the current processed data directory to ASCII and writes it to the file
au_equilte Used by Iconnmr to change samples for temperature experi-ments
au_getl1d Acquire sweep width optimized 1D spectra.
au_getlcosy Acquire sweep width optimized COSY spectra.
au_getlcosyp Acquire sweep width optimized phase sensitive COSY spectra.
au_getlinv Acquire sweep width optimized 2D inverse spectra.
au_getlxhco Acquire sweep width optimized XH correlated spectra.
au_mult AU program for C13 multiplicity analysis.
au_noediff noe difference spectroscopy using different expnos.
au_noemult noe difference spectroscopy with multiple irradiation points for each multiplet using different expnos.
au_water Acquire water-suppression spectra for use in foreground (xau,xaua).
au_watersc Acquire water-suppression spectra for use in automation, e.g., with sample changer.
au_zg General AU program for data acquisition.
au_zg135 Acquire DEPT135 type spectra.
au_zgcosy Acquire COSY type spectra.
au_zgglp Automatic data evaluation according to GLP standards. This AU program takes O1, SW and O2 as arguments and then works like au_zg.
au_zgnr Acquisition with rotation switched off.
au_zgonly General AU program for data acquisition.
au_zgsino Acquisition with signal to noise break up.
au_zgte Acquisition with temperature setting.
aunmp_tojdx Used in LIMS automation to process data. First, AUNMP is executed, then, if specified, the command given on the command line.
autoflist Automatic generation of a frequency list for the peaks in the plot region of the spectrum.
autot1 Automatic processing of a 2D T1/T2 experiment with subsequent T1/T2 calculation.
bintoasc Converts experiments from /u/exp/stan/nmr/par containing old binary metafiles to an experiment which then contains the same plot parameters but in ASCII format.
bsms_exam Example AU program which shows how to use low level functions to read or write BSMS parameters.
bsms_vtu_exam Example AU program which shows how to use low level functions to read or write BSMS or VTU (BVT1000/BDTC) parameters.
butselau Acquisition with butselnmr (buttonmr for selective experiments) from within XWIN-NMR.
buttonau Acquisition with buttonnmr from within XWIN-NMR.
calcphinv Calculate the phase correction for the F1 dimension in HMQC/HSQC type experiments.
calfun Calculates an FID from an arbitrary function. This AU program is especially useful when you want to create a user defined window function for the ´uwm´ command.
cmdpanaux Controls the start and function of command panels (see cpan command for more details).
coiltemp Read the Shim Coil Temperature.
convto1d Converts a 2D spectrum to 1D format.
decon_t1 Automatic deconvolution of a 2D T1/T2 experiment.
deptcyc Creates 3 DEPT experiments from 13C experiment with CPD and then performs multiple cycles of NS scans (times 2 for DEPT90).
depthalt Halt "deptcyc" AU program.
diffe Calculate the difference spectra between expnos.
diffp Calculate the difference spectra between procnos.
dosy setup for diffusion/DOSY experiments linear gradient amplitude ramp
dosyq setup for diffusion/DOSY experiments "squared" gradient amplitude ramp
f1ref Corrects the referencing in F1 for inverse type experiments.
fidadd Add up FID?s in incremented expno?s.
fidtoser Writes a number of fids that are stored under the same NAME and incremental EXPNOs to a ser file.
getphsum Reads the total phase values from the status parameters and stores them back to the actual parameters.
goalternate Acquire alternated X/Y measurements. N averages are acquired alternatingly in two experiments.
gpro Does the same as if you enter ?eda? and then click on PROSOL.
gradpreemp Preemphasis adjustment for gradient spectroscopy on AMX/ARX/ASX with gradient waveform memory.
gradprog Set the relevant parameters and generate the necessary files for the execution of pulse programs containing up to ten shaped gradient pulses in three orthogonal directions. For AMX/ARX/ASX with gradient waveform memory
gradratio Calculate gradient ratios for common inverse gradient pulse
programs.
gradshapes Calculate various gradient shapes.
gradshimau Start gradshim gradient shimming procedure.
guide Perform a remote request server for the ?NMR Guide and Encyclopedia? client.
gv Returns the currently running xwinnmr version and the directory it is stored in.
humpcal Performs the ?hump test?. Measures the width of a peak at 0.55% and 0.11% of its signal height.
hwcal Calculate the width of a peak at half height.
iexpno Program to change to a new experiment number.
ilhalt Stop an interleaved acquisition which was started with the AU program interleave.
interleave Perform interleaved acquisitions.
jconv_aufx Converts Jeol FX data in a loop. The data must be stored with increasing extensions like proton.1, proton.2, ... etc.
list_pp Scans all experiment numbers of the current data set for the pulse program name and the first 30 characters of the tittle. All experiments that are found are listed on the screen. If an experiment is selected, then it is made the foreground data-set. listall_au Scans all AU programs and extracts the name and the short description. This information is then copied into the file listall in your home directory. This list corresponds to the list you are currently reading.
mkflist Automatically generates a frequency list file.
mulabel Processing AU program for determination of 13C multiplicity.
multanal Interactive AU program for determination of 13C multiplicity.
multext Processing AU program for determination of 13C multiplicity
multi_decon Automatic deconvolution of a series of 1D spectra with AI calibration.
multi_integ Automatic integration of a series of 1D spectra with AI calibration.
multi_integ2 Automatic integration of a series of 1D spectra with calibra-tion
of the integral values.
multicom Executes an XWIN-NMR command in increasing expnos.
multicyc Cycles through a series of acquisitions of increasing expnos.
multiefp Performs multiple "efp" on increasing expnos.
multiexpt Calculates experimental time for multizg.
multifp Performs multiple "fp" on increasing expnos.
multiftapk Performs multiple "ft;apk" on increasing expnos.
multihalt Halt "multicyc" AU program.
multimas Performs multiple MAS experiments on increasing expnos.
multipcom Executes an XWIN-NMR command in increasing procnos.
multiwinpro Performs multiple processing on increasing expnos. The
program asks for the window function and its parameters.
multixfb Performs multiple "xfb" on increasing expnos.
multizg Performs multiple acquisitions on increasing expnos.
noediff noe difference spectroscopy using different expnos.
noeflist Automatic generation of a frequency list with the peaks from the current plot region for noe.
noemult noe difference spectroscopy with multiple irradiation points for each multiplet using different expnos.
o1f1 Correct calibration of F1 axes in 2D MQ experiments of odd half integer nuclei.
paropt Parameter optimization au program.
parray Parameter optimization au program using parameter arrays. Derived from ?paropt?, but several parameters may now be changed per experiment. In addition, parameters are not changed via constant increments. Instead, the values are taken from an array.
pecosy Program to pre-process P.E.COSY raw data before 2D-FT.
phtran Transfer phase correction parameters PHC0 and PHC1 into acquisition parameters PH_ref and DE.
plot_3d Plot planes of a 3D dataset.
plot_sino Plot spectrum, scaling depends on Signal/Noise.
popt Parameter optimization au program using parameter arrays. Derived from ?paropt? but several parameters may be optimized. The parameters are changed according to the parameter arrays.Input parameter values are taken from an array.
popthalt Halt "popt" AU program.
pp2d Performs a 2D peak picking with the help of the XWIN-NMR command "pp" for 1D spectra.
pp2dmi Sets the peak picking parameter MI according to the param-eter S_DEV and performs a 2D peak picking with the AU program "pp2d".
proc_1H Processing AU program for 1H spectra without baseline correction after processing.
proc_1d Basic processing AU program for 1D spectra.
proc_1dapks Like proc_1d but using APKS instead of APK.
proc_1dconlf Processing AU program for 1D-spectra with conditional lowfield plot.
proc_1dexp Processing AU program for 1D spectra with automatic expansions.
proc_1dglp Processing AU program with automatic data evaluation according to GLP standards. This AU program takes CY as an argument and then works like proc_1d.
proc_1dinfo Processing AU program for 1D spectra with contents of the info file put into the plot title.
proc_1dlf Processing AU program for 1D spectra with additional low field.
proc_1dlfexp Processing AU program for 1D spectra with additional low field plot and automatic expansions.
proc_1dppti Processing AU program for 1D spectra where the peak picking result appears as part of the plot title.
proc_2d Processing AU program for 2D spectra without plotting.
proc_2dcosy Processing AU program for phase sensitive 2D COSY type spectra.
proc_2ddqf Processing AU program for phase sensitive 2D DQF type spectra.
proc_2dinv Processing AU program for 2D inverse type spectra.
proc_2dnoesy Processing AU program for 2D NOESY type spectra.
proc_2dpl Processing AU program for 2D type spectra which don?t need symmetrization.
proc_2dsym Processing AU program for 2D COSY type spectra.
proc_2dt1 Automatic processing of a 2D T1/T2 experiment with subsequent T1/T2 calculation.
proc_cosy Processing AU program for 2D COSY type spectra.
proc_cpd135 Processing AU program for 13C CPD and DEPT135 spectra which were acquired with the AU program au_zg135.
proc_glp Automatic GLP data evaluation.
proc_gsml Processing AU program for inverse 2D-spectra which were acquired with the pulse program invigsmltp.
proc_intrng Processing AU program which uses a predefined integral range file rather than the one created by abs.
proc_no AU program which does no processing.
proc_noe Automatic processing of noediff spectra.
proc_t1 Automatic processing of a 2D T1/T2 experiment with subsequent T1/T2 calculation.
proc_xhcorr Processing AU program for 2D HETCOR type spectra.
psys180f1t1 Processing AU program for the 180 degree pulse calibration tests.
psysamp1s39 Processing AU program for the amplitude stability tests - with shaped pulse - with 30 degree pulse - with 90 degree pulse - after gradient echo (5msec, 30 G/cm) - after gradient echo (5msec, 10 G/cm) - after gradient pulse (1msec, 10G/cm).
psysb1hom Processing AU program for the B1 homogeneity test.
psyscancel Processing AU program for the - phase cycling cancellation test - phase cycling cancellation test after gradient pulse.
psysdante1 Processing AU program for the dante type turn on test.
psysexpro1 Processing AU program for the - excitation profile (16 usec gauss shape) test - excitation profile (6 msec gauss shape) test.
psysglitch Processing AU program for the glitch test.
psysgrreco1 Processing AU program for the gradient recovery test.
psysgrzpro Processing AU program for the z-gradient profile.
psysmodl1 Processing AU program for the - modulator linearity test - shaped pulse modulator linearity test.
psysmultl1 Processing AU program for the amplitude linearity test (1dB power level steps).
psysphas1st Processing AU program for the - phase stability test ("13 degree test") - shaped pulse phase stability test (16 usec gaussian shape, "13 degree test").
psysphasf1 Processing AU program for the - phase propagation test - phase shifting test.
psyspullin1 Processing AU program for the - amplitude linearity test - shaped pulse amplitude linearity test (pulse length *2, power level +6).
psysquadim Processing AU program for the quad image suppression test.
psysrgtest Processing AU program for the receiver gain test (analog and digital).
psyssoftp1 Processing AU program for the shaped pulse comparison
(rectangular, gaussian, eburp1).
psysturnon Processing AU program for the turn on test.
pulse Program to calculate attenuation value for given pulse length or nutation frequency, or vice versa.
qnpset Define the QNP parameter according to the currently defined probehead.
quadplot First plots a 2D overview spectrum and then the 4 quadrants of the 2D spectrum.
queue Queue data acquisition.
queue_init Initialise data acquisition with the AU program queue.
queuerga Queue data acquisition.
r23mplot Read 2D slices from a 3D data set and plot them.
r23mult Repeatedly reads slices from a 3D data set (3rrr) into successiveexperiment numbers.
rampXY 3D gradient shimming with the BSMS RCB board.
remproc Automatic conversion and processing of data sets transferred via BRUKNET, LIGHTNET, NMR-LINK or TCP-LINK.
repeat Repeat an acquisition with exactly the same parameters, pulse program and other lists.
runproc Re-process data, measured by ICON-NMR.
secplot Generate a section plot. The overview spectrum is plotted together with a vertical expansion of a smaller part of the spectrum on top of it.
selget Import a shaped pulse into the current dataset.
selput Export the current FID into a wave form file.
set_sreglist Set SREGLST parameter from NUC1 and SOLVENT.
shear Program for 2D MQ experiments on nuclei with odd half integer spin for shearing the 2D spectrum after 2D FT.
showpp Start NMR-SIM pulse program display. This program is used by the NMR guide&encyclopedia.
simplex AU program for autoshimming. It is suitable for adjustment
of strongly coupled shim groups which may be far from the optimum position.
simtoseq Converts data which have been recorded in digital and qsim mode to data which appear to be acquired in qseq mode.
sinocal Calculates the signal to noise ratio.
split2D Splits a processed 2D file into single 1D spectra.
splitinvnoe Separate NOE and NONOE data obtained with a pulse program like invinoef3gpsi.
splitser Splits a ser file into single fids, starting with the expno which follows the ser file.
splitxf Separate and combine double half filtered data (G. Otting & K. Wuethrich, J. Magn. Reson. 85, 586 - 594 (1989)) obtained with a pulse program like noesyf3gpstxf19
stack1d Generates a stacked plot of 1D spectra from increasing or decreasing EXPNOs or PROCNOs.
stack2d Generate a 2D stack plot.
sti Displays the title of the current dataset in a window without opening an editor ( FAST! )
suppcal Calculates the width of the Water peak at 100% and 50% of the DSS signal height. The result is referred to as the ?water suppression test?.
sys180f1t1 Acquisition AU program for the 180 degree pulse calibration test with different phases.
sys180f1t2 Acquisition AU program for the 180 degree pulse calibration test with different flip angles.
sysamp1sp9 Acquisition AU program for the shaped pulse amplitude stability test.
sysamp1st Acquisition AU program for the amplitude stability tests - with 30 degree pulse - with 90 degree pulse.
sysb1hom Acquisition AU program for the B1 homogeneity test.
syscancel Acquisition AU program for the phase cycling cancellation test.
sysdante1 Acquisition AU program for the dante type turn on test.
sysexpro1 Acquisition AU program for the - excitation profile (16 usec gauss shape) test - excitation profile (6 msec gauss sh ape) test.
sysgenpar Preparation AU program for all HWT test programs.
sysglitch Acquisition AU program for the glitch test.
sysgrcan Acquisition AU program for the phase cycling cancellation test after gradient pulse.
sysgrecho Acquisition AU program for the amplitude stability test after gradient echo (5msec, 30 G/cm and 5msec, 10 G/cm).
sysgrreco1 Acquisition AU program for the gradient recovery test.
sysgrstab Acquisition AU program for the amplitude stability test after gradient pulse (1msec, 10G/cm).
psysgrzpro Acquisition AU program for the z-gradient profile.
sysmodl1 Acquisition AU program for the modulator linearity test
sysmodls1 Acquisition AU program for the shaped pulse modulator linearity test.
sysmultl1 Acquisition AU program for the amplitude linearity test (1dB power level steps).
sysphas1sp Acquisition AU program for the shaped pulse phase stability test (16 usec gaussian shape, "13 degree test").
sysphas1st Acquisition AU program for the phase stability test ("13 degree test").
sysphasf1 Acquisition AU program for the - phase propagation test - phase shifting test.
syspullin1 Acquisition AU program for the amplitude linearity test (pulse length *2, power level +6).
sysquadim Acquisition AU program for the quad image suppression test.
sysrgtest Acquisition AU program for the receiver gain test (analog and digital).
syssoftp1 Acquisition AU program for the shaped pulse comparison (rectangular, gaussian, eburp1).
syssplin1 Acquisition AU program for the shaped pulse amplitude linearity test (pulse length *2, power level +6).
systurnon Acquisition AU program for the turn on test.
testsuite Test the general functionality of an XWIN-NMR release version. Basic functionality is given if this program is com-pleted without error messages.
tmscal Performs a peak picking around the TMS signal. If the two satellites from the 29Si - 1H coupling can be detected, the resolution is OK.
tune Tune a probehead.
vtu_exam Example AU program which shows how to use low level functions to read or write VTU (BVT1000/BDTC) parameters.
xfshear Program for shearing of 2D MQMAS spectra of odd half integer quadrupolar nuclei. Data need to be acquired in States Mode
xwp_p1dlf Processing AU program for 1D spectra with additional low field plot.AUTOPLOT (the automatic version of XWIN-PLOT) is used instead of XWIN-NMR?s plot.
xwp_p2dpl Processing AU program for 2D type spectra which don?t need a symmetrization. AUTOPLOT (the automatic version *of XWIN-PLOT) is used instead of XWIN-NMR?s plot.
xwp_pcpd135 Processing AU program for 13C CPD and DEPT135 spectra which were acquired with the AU program au_zg135. AUTOPLOT (the automatic version of XWIN-PLOT) is used instead of XWIN-NMR?s plot.
zg_2Hoffon General AU program for data acquisition. The lock is switched off before the acquisition is started.
2df1shift Shift a 2D spectrum along the F1 axis.
2dgetref Gets parameters for a 2D spectrum from the 1D reference spectra : Nucleus, Frequencies, Spectral Width, and reference plot data set names. The F2 reference is taken from the second dataset. The F1 reference is taken from the third dataset.
2dshift Shift 2D time domain data left or right over NSP points.
2nde Set 2nd data set to new expno and 3rd data set equal to fore-ground
data set.
2ndn Set 2nd data set to new name and 3rd data set equal to fore-ground
data set.